pytometry.tl.normalize_arcsinh

pytometry.tl.normalize_arcsinh#

pytometry.tl.normalize_arcsinh(adata, cofactor=5, inplace=True)#

Inverse hyperbolic sine transformation.

Parameters:

  • adata (AnnData) – AnnData object.

  • cofactor (float | Series (default: 5)) – All values are divided by this factor before arcsinh transformation. Recommended value for cyTOF data is 5 and for flow data 150.

  • inplace (bool (default: True)) – Return a copy instead of writing to adata.

Return type:

AnnData | None

Returns:

Depending on inplace, returns or updates adata in the following field adata.X is then a normalised adata object

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