pytometry.io.read_fcs

pytometry.io.read_fcs(path, reindex=True)

Read FCS file and convert into AnnData format.

Parameters:

• path (str) – location of fcs file to parse

• reindex (bool (default: True)) – use the marker info to reindex variable names

Return type:

AnnData

Returns:

An AnnData object of the fcs file